The Summer School provides hands-on training in computational analysis of proteomics data generated by modern mass spectrometers. The practical parts will enable participants to perform sophisticated quantitative data analysis in their own future research using the publicly available MaxQuant and Perseus software.
MaxQuant Summer School 2024 will be in Munich, Germany
Date: September 9 - 13, 2024
Location: Hörsaal "Walther-Straub-Institut für Pharmakologie und Toxikologie", LMU
Address: Schillerstraße 53, 80336 München
Location: Hörsaal "Walther-Straub-Institut für Pharmakologie und Toxikologie", LMU
Address: Schillerstraße 53, 80336 München
Registration will open on January 2024
Schedule for time zone UTC-12
| Time/Day | Sunday, September 08 | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|---|
| 00:00 |
|
Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 00:45 |
|
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 01:30 |
|
Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 02:00 |
|
T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 02:45 |
|
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 03:30 |
|
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A | |
| 18:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 19:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
|
| 19:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
|
| 20:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
| 21:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
|
| 21:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
|
| 22:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
Schedule for time zone UTC-11
| Time/Day | Sunday, September 08 | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|---|
| 01:00 |
|
Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 01:45 |
|
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 02:30 |
|
Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 03:00 |
|
T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 03:45 |
|
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 04:30 |
|
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A | |
| 19:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 20:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
|
| 20:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
|
| 21:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
| 22:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
|
| 22:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
|
| 23:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
Schedule for time zone UTC-10
| Time/Day | Sunday, September 08 | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|---|
| 00:30 |
|
Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 02:00 |
|
Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 02:45 |
|
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 03:30 |
|
Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 04:00 |
|
T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 04:45 |
|
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 05:30 |
|
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A | |
| 20:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 21:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
|
| 21:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
|
| 22:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
| 23:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
|
| 23:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
|
Schedule for time zone UTC-9
| Time/Day | Sunday, September 08 | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|---|
| 00:00 |
|
L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 00:45 |
|
L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 01:30 |
|
Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 03:00 |
|
Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 03:45 |
|
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 04:30 |
|
Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 05:00 |
|
T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 05:45 |
|
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 06:30 |
|
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A | |
| 21:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 22:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
|
| 22:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
|
| 23:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
Schedule for time zone UTC-8
| Time/Day | Sunday, September 08 | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|---|
| 00:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 01:00 |
|
L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 01:45 |
|
L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 02:30 |
|
Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 04:00 |
|
Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 04:45 |
|
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 05:30 |
|
Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 06:00 |
|
T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 06:45 |
|
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 07:30 |
|
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A | |
| 22:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 23:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
|
| 23:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
|
Schedule for time zone UTC-7
| Time/Day | Sunday, September 08 | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|---|
| 00:00 |
|
L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 00:45 |
|
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 01:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 02:00 |
|
L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 02:45 |
|
L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 03:30 |
|
Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 05:00 |
|
Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 05:45 |
|
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 06:30 |
|
Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 07:00 |
|
T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 07:45 |
|
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 08:30 |
|
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A | |
| 23:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
Schedule for time zone UTC-6
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 00:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 01:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 01:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 02:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 03:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 03:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 04:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 06:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 06:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 07:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 08:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 08:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 09:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC-5
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 01:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 02:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 02:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 03:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 04:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 04:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 05:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 07:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 07:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 08:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 09:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 09:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 10:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC-4
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 02:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 03:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 03:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 04:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 05:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 05:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 06:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 08:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 08:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 09:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 10:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 10:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 11:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC-3
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 03:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 04:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 04:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 05:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 06:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 06:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 07:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 09:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 09:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 10:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 11:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 11:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 12:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC-2
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 04:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 05:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 05:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 06:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 07:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 07:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 08:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 10:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 10:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 11:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 12:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 12:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 13:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC-1
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 05:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 06:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 06:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 07:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 08:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 08:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 09:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 11:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 11:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 12:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 13:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 13:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 14:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC+0
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 06:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 07:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 07:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 08:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 09:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 09:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 10:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 12:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 12:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 13:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 14:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 14:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 15:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC+1
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 07:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 08:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 08:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 09:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 10:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 10:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 11:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 13:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 13:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 14:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 15:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 15:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 16:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC+2
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 08:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 09:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 09:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 10:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 11:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 11:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 12:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 14:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 14:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 15:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 16:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 16:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 17:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC+3
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 09:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 10:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 10:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 11:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 12:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 12:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 13:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 15:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 15:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 16:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 17:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 17:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 18:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC+4
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 10:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 11:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 11:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 12:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 13:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 13:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 14:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 16:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 16:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 17:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 18:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 18:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 19:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC+5
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 11:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 12:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 12:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 13:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 14:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 14:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 15:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 17:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 17:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 18:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 19:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 19:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 20:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC+6
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 12:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 13:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 13:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 14:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 15:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 15:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 16:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 18:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 18:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 19:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 20:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 20:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 21:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC+7
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 13:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 14:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 14:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 15:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 16:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 16:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 17:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 19:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 19:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 20:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 21:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 21:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 22:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC+8
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 14:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 15:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
| 15:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
| 16:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 17:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
| 17:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
| 18:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 20:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
| 20:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
| 21:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 22:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 22:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 23:30 |
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A |
Schedule for time zone UTC+9
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 | Saturday, September 14 |
|---|---|---|---|---|---|---|
| 00:30 |
|
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A | |
| 15:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 16:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
|
| 16:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
|
| 17:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
| 18:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
|
| 18:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
|
| 19:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
| 21:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
|
| 21:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
|
| 22:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
|
| 23:00 | T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics |
|
|
| 23:45 |
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics |
|
Schedule for time zone UTC+10
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 | Saturday, September 14 |
|---|---|---|---|---|---|---|
| 00:00 |
|
T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 00:45 |
|
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 01:30 |
|
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A | |
| 16:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 17:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
|
| 17:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
|
| 18:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
| 19:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
|
| 19:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
|
| 20:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
| 22:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
|
| 22:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
|
| 23:30 | Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
|
Schedule for time zone UTC+11
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 | Saturday, September 14 |
|---|---|---|---|---|---|---|
| 00:30 |
|
Coffee break | Coffee break |
Social events
|
Coffee break | Coffee break |
| 01:00 |
|
T01: MaxQuant DDA basics | L09: MaxQuant Atlas | T14: PTMs | T23: Single cell proteomics | |
| 01:45 |
|
T02: MaxQuant DDA intermediate
|
T05: MaxQuant Atlas
|
T15: Plug-in programming
|
T24: Peptidomics proteogenomics | |
| 02:30 |
|
L06: MaxQuant.Live
|
L10: CCS
|
T16: Paleoproteomics
|
Closing Q&A | |
| 17:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 18:00 | L01: Andromeda search engine | L07: DIA identification | L11: PTMs | T09: Perseus basics I | T17: Multi-omics |
|
| 18:45 |
L02: Features and MS1 labeling
|
L08: DIA quantification and multiplexing
|
T07: PTM DIA
|
T10: Perseus basics II
|
T18: Interactions
|
|
| 19:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
| 20:00 | L03: Label-free quantification | T03: DIA | T08: Dependent peptides | T11: Perseus intermediate | T19: Protein isoforms |
|
| 20:45 | L04: Isobaric labeling |
T04: De-novo sequencing
|
L12: Machine learning and spectrum prediction
|
T12: Isobaric labeling
|
T20: Cross linking
|
|
| 21:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
| 23:00 | Keynote speaker | Keynote speaker | Keynote speaker | Keynote speaker |
T21: Networks: PHOTON
|
|
| 23:45 |
L05: Output tables
|
T05: Metaproteomics
|
L13: Perseus introduction
|
T13: Perseus time-series
|
T22: Networks: METIS |
|
Open position for Postdocs
Our group ( CoxLab ) is currently looking for Postdocs. If you have expertise in Computational Biology with a programming background and you want to join our group contact Jürgen Cox: cox@biochem.mpg.de
Summer School Contacts:
For questions send an e-mail to the following address:
summerschool@maxquant.de
Physical address:
Max-Planck-Institute of Biochemistry - Computational Systems Biochemistry
Am Klopferspitz 18, D-82152 Martinsried, Germany